PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030764
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 313aa    MW: 34160.7 Da    PI: 6.8458
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030764genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034115137123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Lus10030764 115 FPCNYCRRKFYSSQALGGHQNAH 137
                  89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.26E-6113142No hitNo description
PROSITE profilePS5015711.24115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MHQLNSKFDL ENNESENSSQ VASNLSAQEP SPDQSKDSTT TTTPSSSLSE LIKLQQIPAP  60
PDLSLDLSLQ LHSQDSDEFV EKFITATEHE TSNEEHQPPA PTPPGGSGGA MPRVFPCNYC  120
RRKFYSSQAL GGHQNAHKRE RTIAKRAMRM GIFSDRYNSL ASLPLHGTTF RNLGIKAHTA  180
MHHQSHILPF QRPPLSAQAQ VLVQPEYNAR AGFGARFEQS YYGVPVLTTT DEEDVSLYWP  240
GSFRQVGSEG FATTTISSNN SNRFGLHFAE RPNTTTTTAS TATGFVAMEG RQRTGHCSSS  300
SSSSAPDLTL KL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072365.16e-81PREDICTED: zinc finger protein 4
RefseqXP_012072364.16e-81PREDICTED: zinc finger protein 4
RefseqXP_012072363.16e-81PREDICTED: zinc finger protein 4
RefseqXP_012072362.16e-81PREDICTED: zinc finger protein 4
TrEMBLA0A067KT796e-81A0A067KT79_JATCU; Uncharacterized protein
STRINGPOPTR_0010s11330.12e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-34zinc finger protein 4